Structure of PDB 6rfl Chain B

Receptor sequence
>6rflB (length=1129) Species: 502057 (Vaccinia virus GLV-1h68) [Search protein sequence]
EMDQRLGYKFLVPDPKAGVFYRPLHFQYVSYSNFILHRLHEILTVKRPLL
SFKNNTERIMIEISNVKVTPPDYSPIIASIKGKSYDALATFTVNIFKEVM
TKEGISITKISSYEGKDSHLIKIPLLIGYGNKNPLDTAKYLVPNVIGGVF
INKQSVEKVGINLVEKITTWPKFRVVKPNSFTFSFSSVSPPNVLPTRYRH
YKISLDISQLEALNISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMP
PEVVYLVNAIIDSAKRITESITDFNIDTYINDLVEAEHIKQKSQLTINEF
KYEMLHNFLPHMNYTPDQLKGFYMISLLRKFLYCIFHTSRYPDRDSMVCH
RILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAVNIHVLTTPGL
NHAFSSLLSGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPVRKYHPSQY
LYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYY
KDDISYFETGFPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVG
ITLVRDHMNEIRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFS
DIQKEFPHVIEMVDIEQFTFSNVCESVQKFRMMSKDERKQYDLCDFPAEF
RDGYVASSLVGINHNSGPRAILGCAQAKQAISCLSSDIRNKIDNGIHLMY
PERPIVISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQR
GGLDIVTAKKHQVEIPLENFNNKERDRSNAYSKLESNGLVRLNAFLESGD
AMARNISSVSEKYTDMYKSRVERVQVELTDKVKVRVLTMKERRPILGDKF
TTRTSQKGTVAYVADETELPYDENGITPDVIINSTSIFSRKTISMLIEVI
LTAAYSAKPYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDE
ELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGK
KTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQD
VYVCENCGDIAAQIKGINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNA
RGVKVKLDFERRPPSFYKPLDKVDLKPSF
3D structure
PDB6rfl Structural Basis of Poxvirus Transcription: Vaccinia RNA Polymerase Complexes.
ChainB
Resolution2.76 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C1087 C1090 C1103 C1106 C1054 C1057 C1070 C1073
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Nov 17 05:53:25 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6rfl', asym_id = 'B', title = 'Structural Basis of Poxvirus Transcription: Vaccinia RNA Polymerase Complexes.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6rfl', asym_id='B', title='Structural Basis of Poxvirus Transcription: Vaccinia RNA Polymerase Complexes.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003677,0003899,0006351,0032549', uniprot = '', pdbid = '6rfl', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0003899,0006351,0032549', uniprot='', pdbid='6rfl', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>