Structure of PDB 6qod Chain B

Receptor sequence
>6qodB (length=213) Species: 36809 (Mycobacteroides abscessus) [Search protein sequence]
SMKIDVVTIFPEYLQPVRLPGKAIDAGLVDVAVHDLRRWTHDVHKSVDDS
PYGGGPGMVMKPTVWGDALDEICTSETLLVVPTPAGYPFTQETAWQWSTE
DHLVIACGRYEGIDQRVADDAATRMRVREVSIGDYVLNGGEAAALVIIEA
VLRLVPGVSLLEGPSYTRPPSWRGMDVPPVLLSGDHAKIAAWRAEQSRQR
TIERRPDLLGFDS
3D structure
PDB6qod Fragment-based discovery of a new class of inhibitors targeting mycobacterial tRNA modification.
ChainB
Resolution1.852 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) P85 E112 R154
Catalytic site (residue number reindexed from 1) P84 E111 R153
Enzyme Commision number 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FBB B P83 T84 P85 I133 L138 G140 G141 P82 T83 P84 I132 L137 G139 G140
Gene Ontology
Molecular Function
GO:0008168 methyltransferase activity
GO:0052906 tRNA (guanine(37)-N1)-methyltransferase activity
Biological Process
GO:0002939 tRNA N1-guanine methylation
GO:0006400 tRNA modification
GO:0008033 tRNA processing
GO:0032259 methylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6qod, PDBe:6qod, PDBj:6qod
PDBsum6qod
PubMed32602532
UniProtB1MDI3

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