Structure of PDB 6ptr Chain B

Receptor sequence
>6ptrB (length=372) Species: 1094552 (Bartonella birtlesii LL-WM9) [Search protein sequence]
HHMRITVDRSQFFKSLGRVHRVVERRNTVPILSNVLIDAENGSVQLKATD
LDLEVTESFTVNIEKAGAITVPAYLLYDIVRKLPDGSEIVLSVDESAMSI
VSGCTHFQLQCLPKIDFPESLPGQFGCRFFLSASKLKHLLDCTQFAISTE
ETRYYLNGIYFHIVHDDVLKLRLVATDGHRLAQVDMEAPSGVDGMPGVII
PRKAVGELQKLLSEEIDGDVCIELSETKIRFSLGSVVFTSKLVDGTFPDY
QRVIPLGNDRKLIVNRQDFSSAVDRVSTISNDRGRAVKLTIEHGQLKLVV
NNPDSGSAEDQLAATYTSEPLEIGFNSRYLLDIAGQLSSDEMVFMLSDAV
APALIRDNNNAEVLYVLMPVRV
3D structure
PDB6ptr Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Bartonella birtlesii bound to griselimycin
ChainB
Resolution1.75 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B Y156 G179 H180 P249 D250 V254 M369 P370 V371 R372 Y155 G178 H179 P248 D249 V253 M368 P369 V370 R371
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0008408 3'-5' exonuclease activity
Biological Process
GO:0006260 DNA replication
GO:0006271 DNA strand elongation involved in DNA replication
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0005737 cytoplasm
GO:0009360 DNA polymerase III complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ptr, PDBe:6ptr, PDBj:6ptr
PDBsum6ptr
PubMed
UniProtJ1IY24

[Back to BioLiP]