Structure of PDB 6pbd Chain B

Receptor sequence
>6pbdB (length=331) Species: 155892 (Caulobacter vibrioides) [Search protein sequence]
FGPETIIHGDCIEQMNALPEKSVDLIFADPPYNLQLSFAAYDKFTREWLK
AARRVLKDDGAIWVIGSYHNIFRVGVAVQDLGFWILNDIVWRKSNPMPNF
KGTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCT
GEERIKGADGQKAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAA
AKRLGRKFIGIEREAEYLEHAKARIAKVVPIAPEDLDVMGSKRAEPRVPF
GTIVEAGLLSPGDTLYCSKGTHVAKVRPDGSITVGDLSGSIHKIGALVQS
APACNGWTYWHFKTDAGLAPIDVLRAQVRAG
3D structure
PDB6pbd The cell cycle-regulated DNA adenine methyltransferase CcrM opens a bubble at its DNA recognition site.
ChainB
Resolution2.343 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.1.1.72: site-specific DNA-methyltransferase (adenine-specific).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B W109 I110 W84 I85
BS02 dna B Y153 K157 V163 Q164 K267 S315 H317 N330 W332 R350 Y128 K132 V138 Q139 K242 S290 H292 N305 W307 R325
BS03 SFG B D12 C13 D31 H189 T191 F216 V219 T221 E237 R238 Y242 D10 C11 D29 H164 T166 F191 V194 T196 E212 R213 Y217
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0008168 methyltransferase activity
GO:0008170 N-methyltransferase activity
GO:0009007 site-specific DNA-methyltransferase (adenine-specific) activity
Biological Process
GO:0006260 DNA replication
GO:0032259 methylation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6pbd, PDBe:6pbd, PDBj:6pbd
PDBsum6pbd
PubMed31601797
UniProtP0CAW2|CCRM_CAUVC DNA methyltransferase CcrM (Gene Name=ccrMIM)

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