Structure of PDB 6ozg Chain B

Receptor sequence
>6ozgB (length=224) Species: 2336 (Thermotoga maritima) [Search protein sequence]
MDYRQLHRWDLPPEEAIKVQNELRKKIKLTPYEGEPEYVAGVDLSFPGKE
EGLAVIVVLEYPSFKILEVVSERGEITFPYIPGLLAFRQGPLFLKAWEKL
RTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRLYGTFKMPE
DKRCSWSYLYDGEEIIGCVIRTKEGSAPIFVSPGHLMDVESSKRLIKAFT
LPGRRIPEPTRLAHIYTQRLKKGL
3D structure
PDB6ozg Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase.
ChainB
Resolution1.93 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.21.7: deoxyribonuclease V.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B L44 F46 Y80 P82 G83 L85 G111 Q112 H116 G121 I122 A138 K139 S140 R141 K221 L44 F46 Y80 P82 G83 L85 G111 Q112 H116 G121 I122 A138 K139 S140 R141 K221
BS02 MG B D43 H214 D43 H214
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003727 single-stranded RNA binding
GO:0004519 endonuclease activity
GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters
GO:0043737 deoxyribonuclease V activity
GO:0046872 metal ion binding
Biological Process
GO:0006281 DNA repair
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:6ozg, PDBe:6ozg, PDBj:6ozg
PDBsum6ozg
PubMed31444105
UniProtQ9X2H9|NFI_THEMA Endonuclease V (Gene Name=nfi)

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