Structure of PDB 6o1m Chain B

Receptor sequence
>6o1mB (length=262) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence]
GPAMRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFDLDDPS
FQLDGYFLYACDAELPEQGGVALYSRLQPKAVISGLGFETADRYGRYLQA
DFDKVSIATLLLPSGQSGDESLNQKFKFMDDFTHYLSKQRRKRREYIYCG
SLYVAHQKMDVKNWRECQQMPGFLAPERAWLDEVFGNLGYADALREVSRE
GDQFSWWPDSEQAEMLNLGWRFDYQVLTPGLRRFVRNAKLPRQPRFSQHA
PLIVDYDWQLSI
3D structure
PDB6o1m Architectural principles for Hfq/Crc-mediated regulation of gene expression.
ChainB
Resolution3.15 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) N9 D35 L108 S148 Y150 D220 Q245 H246
Catalytic site (residue number reindexed from 1) N12 D38 L111 S151 Y153 D223 Q248 H249
Enzyme Commision number 3.1.11.2: exodeoxyribonuclease III.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B K155 M156 W161 R162 R196 K158 M159 W164 R165 R199
BS02 rna B A78 R138 R140 R141 A81 R141 R143 R144
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004518 nuclease activity
GO:0008311 double-stranded DNA 3'-5' DNA exonuclease activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
Biological Process
GO:0006281 DNA repair

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6o1m, PDBe:6o1m, PDBj:6o1m
PDBsum6o1m
PubMed30758287
UniProtQ51380

[Back to BioLiP]