Structure of PDB 6ny6 Chain B

Receptor sequence
>6ny6B (length=236) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
ITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERT
FRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTN
FKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRL
LKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGN
DDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQ
3D structure
PDB6ny6 Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability.
ChainB
Resolution3.74 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B K22 P26 N37 R96 L98 G99 G100 T103 N104 R111 K133 R144 Y148 I172 R175 E176 K179 K18 P22 N33 R92 L94 G95 G96 T99 N100 R107 K129 R140 Y144 I168 R171 E172 K175
BS02 MG B K74 D166 K169 D191 D205 K70 D162 K165 D187 D201
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ny6, PDBe:6ny6, PDBj:6ny6
PDBsum6ny6
PubMed31501867
UniProtP80371|RS2_THET8 Small ribosomal subunit protein uS2 (Gene Name=rpsB)

[Back to BioLiP]