BioLiP

>6nitB (length=793) Species: 9606 (Homo sapiens) [Search protein sequence]

AFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDICPRRVNREIV
EHMVQHFKTQIFGKPVFDGRKNLYTAMPLPIGRDKVELEVTLPIFKVSIK
WVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFT
ASSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCE
VLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCKRKYRVCNVTRRPA
SHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYL
PLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSADFN
TDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRN
KQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQP
CFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTV
LGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQ
PVIFLGADVTHPPPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAM
VRELLIQFYKSTRFKPTRIIFYRAGVSEGQFQQVLHHELLAIREACIKLE
KDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTE
FDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTR
SVSIPAPAYYAHLVAFRARYHDHQALAKAVQVHQDTLRTMYFA

Site
#

Ligand

Ligand
chain

Binding residues on receptor
(original residue number in PDB)

Binding residues on receptor
(residue number reindexed from 1)

Binding affinity

BS01

rna

A221 I365 A369 R375 L522 G524 T526 Y529 K533 Q545 C546 Q548 N551 T559 N562 L563 K566 R710 R714 H753 I756 Q757 T759 S760 R761 Y790 R792 C793 R795 V797 S798 Y804

A185 I326 A330 R336 L483 G485 T487 Y490 K494 Q506 C507 Q509 N512 T520 N523 L524 K527 R665 R669 H708 I711 Q712 T714 S715 R716 Y745 R747 C748 R750 V752 S753 Y759

BS02

rna

C66 P67 R280 Q334 Q558 T599 H600 R635 E637 G670 I756 Q757 H807 F811 R814

C41 P42 R241 Q295 Q519 T560 H561 R590 E592 G625 I711 Q712 H762 F766 R769

Molecular Function

GO:0000340

RNA 7-methylguanosine cap binding

GO:0000993

RNA polymerase II complex binding

GO:0001046

core promoter sequence-specific DNA binding

GO:0003676

nucleic acid binding

GO:0003723

RNA binding

GO:0003725

double-stranded RNA binding

GO:0003727

single-stranded RNA binding

GO:0003729

mRNA binding

GO:0003743

translation initiation factor activity

GO:0004519

endonuclease activity

GO:0004521

RNA endonuclease activity

GO:0005515

protein binding

GO:0016891

RNA endonuclease activity, producing 5'-phosphomonoesters

GO:0035197

siRNA binding

GO:0035198

miRNA binding

GO:0035925

mRNA 3'-UTR AU-rich region binding

GO:0046872

metal ion binding

GO:0061980

regulatory RNA binding

GO:0070551

endoribonuclease activity, cleaving siRNA-paired mRNA

GO:0090624

endoribonuclease activity, cleaving miRNA-paired mRNA

GO:0098808

mRNA cap binding

	Biological Process
GO:0006355	regulation of DNA-templated transcription
GO:0006412	translation
GO:0006413	translational initiation
GO:0006417	regulation of translation
GO:0009791	post-embryonic development
GO:0010501	RNA secondary structure unwinding
GO:0010586	miRNA metabolic process
GO:0010628	positive regulation of gene expression
GO:0030422	siRNA processing
GO:0031047	regulatory ncRNA-mediated gene silencing
GO:0031054	pre-miRNA processing
GO:0033962	P-body assembly
GO:0035194	regulatory ncRNA-mediated post-transcriptional gene silencing
GO:0035196	miRNA processing
GO:0035278	miRNA-mediated gene silencing by inhibition of translation
GO:0035279	miRNA-mediated gene silencing by mRNA destabilization
GO:0042985	negative regulation of amyloid precursor protein biosynthetic process
GO:0045727	positive regulation of translation
GO:0045766	positive regulation of angiogenesis
GO:0045944	positive regulation of transcription by RNA polymerase II
GO:0045947	negative regulation of translational initiation
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0070922	RISC complex assembly
GO:0090128	regulation of synapse maturation
GO:0090625	siRNA-mediated gene silencing by mRNA destabilization
GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:1901165	positive regulation of trophoblast cell migration

Biological Process

GO:0006355

regulation of DNA-templated transcription

GO:0006412

translation

GO:0006413

translational initiation

GO:0006417

regulation of translation

GO:0009791

post-embryonic development

GO:0010501

RNA secondary structure unwinding

GO:0010586

miRNA metabolic process

GO:0010628

positive regulation of gene expression

GO:0030422

siRNA processing

GO:0031047

regulatory ncRNA-mediated gene silencing

GO:0031054

pre-miRNA processing

GO:0033962

P-body assembly

GO:0035194

regulatory ncRNA-mediated post-transcriptional gene silencing

GO:0035196

miRNA processing

GO:0035278

miRNA-mediated gene silencing by inhibition of translation

GO:0035279

miRNA-mediated gene silencing by mRNA destabilization

GO:0042985

negative regulation of amyloid precursor protein biosynthetic process

GO:0045727

positive regulation of translation

GO:0045766

positive regulation of angiogenesis

GO:0045944

positive regulation of transcription by RNA polymerase II

GO:0045947

negative regulation of translational initiation

GO:0060213

positive regulation of nuclear-transcribed mRNA poly(A) tail shortening

GO:0070922

RISC complex assembly

GO:0090128

regulation of synapse maturation

GO:0090625

siRNA-mediated gene silencing by mRNA destabilization

GO:1900153

positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

GO:1901165

positive regulation of trophoblast cell migration

	Cellular Component
GO:0000932	P-body
GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0016020	membrane
GO:0016442	RISC complex
GO:0030425	dendrite
GO:0036464	cytoplasmic ribonucleoprotein granule
GO:0043232	intracellular non-membrane-bounded organelle
GO:0070062	extracellular exosome
GO:0070578	RISC-loading complex
GO:0098794	postsynapse
GO:0098978	glutamatergic synapse
GO:1990904	ribonucleoprotein complex

Cellular Component

P-body

nucleus

nucleoplasm

cytoplasm

cytosol