Structure of PDB 6ndy Chain B

Receptor sequence
>6ndyB (length=322) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG
NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE
KLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMN
GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN
VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFK
DVSETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP
TVNEDDLLKQEQFTRDFGQEGN
3D structure
PDB6ndy Structure of Vps4 with circular peptides and implications for translocation of two polypeptide chains by AAA+ ATPases.
ChainB
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B K205 W206 E245 K94 W95 E134
BS02 BEF B R288 R289 R177 R178
BS03 ADP B G176 T177 K179 S180 Y181 G336 G65 T66 K68 S69 Y70 G225
BS04 BEF B P175 G176 K179 N277 P64 G65 K68 N166
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:6ndy, PDBe:6ndy, PDBj:6ndy
PDBsum6ndy
PubMed31184588
UniProtP52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 (Gene Name=VPS4)

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