Structure of PDB 6ncp Chain B

Receptor sequence

>6ncpB (length=212) Species: 9606 (Homo sapiens) [Search protein sequence]

AIRMTQSPSSLSASVGDRVTITCQASQDIKKSLNWYRQKPGKAPELLIHD
ASILQTGVPSAFTASGSGTHFSFVINKLQPEDVGTYFCQEYENLQFTFGP
GTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKV
DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG
LSSPVTKSFNRG

3D structure

PDB

6ncp Conformational Plasticity in the HIV-1 Fusion Peptide Facilitates Recognition by Broadly Neutralizing Antibodies.

Chain

Resolution

2.76 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	S10 S12 E105 K107 Y140	S10 S12 E105 K107 Y140
BS02	GLY	B	Q24 S26	Q24 S26

External links

PDB	RCSB:6ncp, PDBe:6ncp, PDBj:6ncp
PDBsum	6ncp
PubMed	31194940

[Back to BioLiP]