Structure of PDB 6m5r Chain B

Receptor sequence
>6m5rB (length=689) Species: 10299 (Human alphaherpesvirus 1 strain 17) [Search protein sequence]
AAPVSEPTVARQKLLALLGQVQTYVFQIELLRRCDPHIGRGKLPQLKLNA
LQVRALRRRLRPGLEAQAGAFLTPLSVTLELLLEYAWREGERLLGSLETF
ATAGDVAAFFTETMGLARPCPYHQRVRLDTYGGTVHMELCFLHDVENFLK
QLNYCHLITPSRGATAALERVREFMVGAVGSGLIVPPELSDPSHPCAVCF
EELCVTANQGATIASRLADRICNHVTQQAQVRLDANELRRYLPHAAGLSD
ADRARALSVLDHALARYAISELQFWLASGDRAGQTTMDAFASNLTALARR
ELQQETAAVAVELALFGRRAEHFDRAFGSHLAALDMVDALIIGGQATSPD
DQIEALIRACYDHHLTTPLLRRLVSPEQCDEEALRRVLARMGAGGQGPET
WGDIATQAAADVRERRRLYADRLTKRSLASLGRCVREQRGELEKMLRVSV
HGEVLPATFAAVANGFAARARFCALTAGAGTVIDNRSAPGVFDAHRFMRA
SLLRHQVDPALLPSITHRFFELVNGPLFDHSTHSFAQPPNTALYYSVENV
GLLPHLKEELARFIMGASGADWAVSEFQRFYCFDGISGITPTQRAAWRYI
RELIIATTLFASVYRCGELELRRPDCSRPTSEGRYRYPPGVYLTYDSDCP
LVAIVESAPDGCIGPRSVVVYDRDVFSILYSVLQHLAPR
3D structure
PDB6m5r Architecture of the herpesvirus genome-packaging complex and implications for DNA translocation.
ChainB
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C121 H124 C120 H123
BS02 ZN B C200 C223 H225 C199 C222 H224
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0046872 metal ion binding
Biological Process
GO:0019073 viral DNA genome packaging
Cellular Component
GO:0042025 host cell nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6m5r, PDBe:6m5r, PDBj:6m5r
PDBsum6m5r
PubMed32328903
UniProtP10212|TRM1_HHV11 Tripartite terminase subunit 1 (Gene Name=TRM1)

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