Structure of PDB 6l4u Chain B

Receptor sequence
>6l4uB (length=731) [Search protein sequence]
ATKFPKFSQALAQDPATRRIWYGIATAHDLEAHDGMTEENLYQKIFASHF
GHLAIIFLWTAGNLFHVAWQGNFEQWVAKPLKTKPIAHSIWDPHFGESAL
KAFSKGNTYPVNIAFSGVYQWWYTIGFRTNQELYAGSIGLLALSCVLLFA
GWLHLQPKFRPSLSWFKNNESRLNHHLSGLLGVSSLAWTGHIVHVAIPAS
RGVHVGWDNFLTTPPHPAGLTPFFTGNWTVYAENPDSASHVYGTSEGAGT
AILTFLGGFHPQTQSLWLSDIAHHQLAIAVVFIIAGHMYRTNFGIGHNMK
EILDAHRPPGGRLGAGHVGLFETITNSLHMQLGLALASLGVATSLTAQHM
YALTPYAYLSKDFTTEAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPEL
NKNNVLARMLEHKEAIISHLSWASLFLGFHTLGLYIHNDTVVAFGQPEKQ
ILFEPVFAEYIQAASGKAVYQFNVLLSSPTSPATVAGNQVWLPGWLDAIN
NPKNDLFLKIGPGDFLVHHAIALGLHVTALILVKGALDARGSKLMPDKKD
FGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHMTIW
GGNPGQFDESSNYIMGWLRDYLWLNSSPLINGYNPFGMNNLSVWSWMFLF
GHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLIRWRDKPVALSI
VQARLVGLAHFSVGYILTYAAFVIASTSGKF
3D structure
PDB6l4u Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom
ChainB
Resolution2.4 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CL0 B L619 W624 L618 W623
BS02 CLA B W647 L650 F651 H653 L654 W656 A657 W646 L649 F650 H652 L653 W655 A656
BS03 CLA B S425 L426 G429 F430 L433 L531 I532 L577 F580 W581 S424 L425 G428 F429 L432 L530 I531 L576 F579 W580
BS04 CLA B R683 T684 P685 R682 T683 P684
BS05 CLA B S419 S422 W423 L426 S418 S421 W422 L425
BS06 CLA B L677 A680 H681 L676 A679 H680
BS07 SF4 B C558 G560 C567 W666 C557 G559 C566 W665
BS08 CLA B Y436 W588 F591 W618 L623 F649 H653 W656 Y716 T719 Y720 F723 Y435 W587 F590 W617 L622 F648 H652 W655 Y715 T718 Y719 F722
BS09 CLA B I437 W581 N584 W588 I615 W656 I436 W580 N583 W587 I614 W655
BS10 CLA B A657 T658 F660 M661 I664 S665 Y669 W670 A656 T657 F659 M660 I663 S664 Y668 W669
BS11 CLA B F5 F8 A28 H29 I56 F4 F7 A27 H28 I55
BS12 CLA B H29 Y43 I46 S49 H50 H53 L54 L329 Q332 L333 A336 L340 H28 Y42 I45 S48 H49 H52 L53 L328 Q331 L332 A335 L339
BS13 CLA B H53 I56 I57 W60 H52 I55 I56 W59
BS14 CLA B L59 W60 G63 F66 H67 W70 Q71 S90 L58 W59 G62 F65 H66 W69 Q70 S89
BS15 CLA B N64 A88 H89 N113 A115 F116 S117 V644 W645 N63 A87 H88 N112 A114 F115 S116 V643 W644
BS16 CLA B I91 W92 D93 H95 F96 N113 V644 I90 W91 D92 H94 F95 N112 V643
BS17 CLA B P94 H95 P93 H94
BS18 CLA B F47 F51 A151 L154 H155 F160 W166 F46 F50 A150 L153 H154 F159 W165
BS19 CLA B W166 S172 H176 N293 W165 S171 H175 N292
BS20 CLA B F47 H50 F51 W166 F167 S172 R173 H176 H177 L181 F283 F46 H49 F50 W165 F166 S171 R172 H175 H176 L180 F282
BS21 CLA B G127 F128 A188 W189 H192 H195 V196 G207 W208 F211 G126 F127 A187 W188 H191 H194 V195 G206 W207 F210
BS22 CLA B L187 A188 T190 G191 V194 H195 L212 T214 P215 P216 G220 L221 L186 A187 T189 G190 V193 H194 L211 T213 P214 P215 G219 L220
BS23 CLA B W229 T230 L254 H274 L277 A278 V281 W228 T229 L253 H273 L276 A277 V280
BS24 CLA B F256 G258 L267 D271 H274 H275 A278 H350 L354 W492 F255 G257 L266 D270 H273 H274 A277 H349 L353 W491
BS25 CLA B L182 S185 S186 W189 H275 Q276 I279 L346 T347 H350 P356 Y357 L181 S184 S185 W188 H274 Q275 I278 L345 T346 H349 P355 Y356
BS26 CLA B L178 F283 A286 M289 Y290 I303 L177 F282 A285 M288 Y289 I302
BS27 CLA B I285 H288 M289 I296 G297 H298 I284 H287 M288 I295 G296 H297
BS28 CLA B H298 E302 I303 A306 H307 H297 E301 I302 A305 H306
BS29 CLA B L304 L314 H318 L321 V406 L407 L303 L313 H317 L320 V405 L406
BS30 CLA B N170 R173 L174 H177 M300 F322 I325 L335 A336 S339 N169 R172 L173 H176 M299 F321 I324 L334 A335 S338
BS31 CLA B V342 S345 L346 Q349 Q375 M382 L526 T585 V341 S344 L345 Q348 Q374 M381 L525 T584
BS32 CLA B V342 L346 Q349 H350 A353 L354 F508 V341 L345 Q348 H349 A352 L353 F507
BS33 CLA B W60 S117 A369 T372 H373 Y376 I377 I717 A721 W59 S116 A368 T371 H372 Y375 I376 I716 A720
BS34 CLA B W60 T61 G118 W122 T344 T347 M351 Y357 L370 H373 H374 W59 T60 G117 W121 T343 T346 M350 Y356 L369 H372 H373
BS35 CLA B I25 A26 H29 D30 H330 L333 L337 G384 H388 I391 R395 Y554 W572 F575 I24 A25 H28 D29 H329 L332 L336 G383 H387 I390 R394 Y553 W571 F574
BS36 CLA B R313 L314 V406 R409 M410 H413 H420 R312 L313 V405 R408 M409 H412 H419
BS37 CLA B W423 L426 F427 F430 H431 W422 L425 F426 F429 H430
BS38 CLA B G434 I437 H438 T441 K450 I452 G433 I436 H437 T440 K449 I451
BS39 CLA B I462 A465 S466 L476 L477 W492 W496 F508 I461 A464 S465 L475 L476 W491 W495 F507
BS40 CLA B L476 P483 A484 A487 W492 L475 P482 A483 A486 W491
BS41 CLA B Q349 F458 A459 I462 Q463 F508 L509 H519 I522 V589 Y592 W593 Q348 F457 A458 I461 Q462 F507 L508 H518 I521 V588 Y591 W592
BS42 CLA B F427 L428 P456 V457 F458 A459 F516 H519 H520 F426 L427 P455 V456 F457 A458 F515 H518 H519
BS43 CLA B L421 A523 H527 L420 A522 H526
BS44 CLA B T18 W22 L677 H681 W692 R693 P696 T17 W21 L676 H680 W691 R692 P695
BS45 CLA B W22 F651 L654 I655 T658 F662 H711 W21 F650 L653 I654 T657 F661 H710
BS46 CLA B H307 R308 P309 P310 R313 L314 H306 R307 P308 P309 R312 L313
BS47 PQN B M661 F662 S665 W666 R667 W670 A698 L699 A704 M660 F661 S664 W665 R666 W669 A697 L698 A703
BS48 CLA B F225 T226 G227 W229 F224 T225 G226 W228
BS49 CLA B F458 Y461 F457 Y460
BS50 CLA B H176 S179 I284 H288 T292 F294 H175 S178 I283 H287 T291 F293
BS51 CLA B H420 W423 H419 W422
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 16 02:51:47 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6l4u', asym_id = 'B', title = 'Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6l4u', asym_id='B', title='Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009522,0009579,0015979,0016020', uniprot = '', pdbid = '6l4u', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009522,0009579,0015979,0016020', uniprot='', pdbid='6l4u', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>