Structure of PDB 6kbz Chain B

Receptor sequence
>6kbzB (length=226) Species: 562 (Escherichia coli) [Search protein sequence]
CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERD
EHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFAD
GWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAA
ADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSW
HPVSRAVGNVKNQGAELIQPVLEVLF
3D structure
PDB6kbz Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.
ChainB
Resolution1.653 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.-.-
4.-.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B C2 G3 R4 P40 W67 L73 N75 R77 S84 R85 F87 W106 K113 T149 R162 G209 N210 C1 G2 R3 P39 W66 L72 N74 R76 S83 R84 F86 W105 K112 T148 R161 G208 N209
BS02 dna B P40 G41 T42 P71 V211 P39 G40 T41 P70 V210
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003697 single-stranded DNA binding
GO:0008233 peptidase activity
GO:0016829 lyase activity
GO:0160129 protein-DNA covalent cross-linking activity
Biological Process
GO:0006508 proteolysis
GO:0006974 DNA damage response
GO:0009432 SOS response
GO:0106300 protein-DNA covalent cross-linking repair

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Molecular Function
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Biological Process
External links
PDB RCSB:6kbz, PDBe:6kbz, PDBj:6kbz
PDBsum6kbz
PubMed31504793
UniProtP76318|YEDK_ECOLI Abasic site processing protein YedK (Gene Name=yedK)

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