Structure of PDB 6k88 Chain B

Receptor sequence
>6k88B (length=228) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
SNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAF
DEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKL
AGPTSFAPIIEMAMTVVEQSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQ
KTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFT
EIMSKNKDQSRKETEFALSALMEIPPQY
3D structure
PDB6k88 RGLG1 MIDAS binds calcium ion
ChainB
Resolution1.788 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B D338 D347 F349 E378 D183 D192 F194 E223
BS02 CA B D338 Q350 E378 D183 Q195 E223
BS03 CA B N156 D205 D207 L209 N2 D51 D53 L55
BS04 CA B T164 S166 T258 Q288 T10 S12 T104 Q133
External links
PDB RCSB:6k88, PDBe:6k88, PDBj:6k88
PDBsum6k88
PubMed
UniProtQ9SS90|RGLG1_ARATH E3 ubiquitin-protein ligase RGLG1 (Gene Name=RGLG1)

[Back to BioLiP]