Structure of PDB 6k6s Chain B

Receptor sequence
>6k6sB (length=441) Species: 176280 (Staphylococcus epidermidis ATCC 12228) [Search protein sequence]
HSNEVGVYALGGLGEVGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVI
PDYTYLEQNQDKIVGLFITHGHEDHIGGVPFLLKQINVPIYGGPLALGLI
RNKLEEHHLLRTTELHEIDESSVIKSKHFEISFYLTTHSIPEAYGVIVDT
PEGKIVHTGDFKFDFTPVGEPANIAKMAQLGHEGVLCLLSDSTNALVPDF
TLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKYNRKIVT
FGRSMENNIKIGMELGYIKAPPETFIEPNKINSVPKHELLILCTGSQGEP
MAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGAD
VIHSKISNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRMLKAHGETGV
QCGVDEDNVFIFDIGDVLALTHDSARKAGRIPSGNVLVDGS
3D structure
PDB6k6s Structure of RNase J1 from Staphylococcus epidermidis
ChainB
Resolution2.993 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN B D78 H79 D164 H368 H390 D74 H75 D160 H364 H386
BS02 MN B H74 H76 H142 D164 H70 H72 H138 D160
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0004527 exonuclease activity
GO:0004534 5'-3' RNA exonuclease activity
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006364 rRNA processing
GO:0006396 RNA processing
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6k6s, PDBe:6k6s, PDBj:6k6s
PDBsum6k6s
PubMed
UniProtQ8CT16|RNJ1_STAES Ribonuclease J 1 (Gene Name=rnj1)

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