Structure of PDB 6jf5 Chain B

Receptor sequence
>6jf5B (length=158) Species: 470 (Acinetobacter baumannii) [Search protein sequence]
SVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGI
AAPQVYISKRVIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEE
GCLSVPDERGQVERAEMVKVKYLTLQGEAVETIFHGFPARIVQHEVDHLN
GILFVERI
3D structure
PDB6jf5 K2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
ChainB
Resolution2.0 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G50 Q55 C103 L104 H145 E146 H149
Catalytic site (residue number reindexed from 1) G49 Q54 C102 L103 H144 E145 H148
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C103 H145 H149 C102 H144 H148
BS02 K2U B G48 V49 Q55 E101 G102 C103 L104 R110 F138 H145 E146 G47 V48 Q54 E100 G101 C102 L103 R109 F137 H144 E145
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:6jf5, PDBe:6jf5, PDBj:6jf5
PDBsum6jf5
PubMed
UniProtA0A098SKQ8

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