Structure of PDB 6jex Chain B

Receptor sequence
>6jexB (length=172) Species: 1409923 (Acinetobacter baumannii MRSN 3527) [Search protein sequence]
ALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQ
VDRHIQLIVMDLSESKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDK
VDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPL
KRQRAREKVEKIVRQREREKVA
3D structure
PDB6jex K4U bound crystal peptide deformylase from Acinetobacter baumanii
ChainB
Resolution2.11 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C92 L93 H134 E135 H138
Catalytic site (residue number reindexed from 1) G45 Q50 C91 L92 H133 E134 H137
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C92 H134 H138 C91 H133 H137
BS02 LHY B G44 I45 G46 Q51 E90 G91 C92 L93 H134 E135 H138 G43 I44 G45 Q50 E89 G90 C91 L92 H133 E134 H137
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:6jex, PDBe:6jex, PDBj:6jex
PDBsum6jex
PubMed
UniProtB0VNL8|DEF_ACIBS Peptide deformylase (Gene Name=def)

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