Structure of PDB 6jew Chain B

Receptor sequence
>6jewB (length=169) Species: 1409923 (Acinetobacter baumannii MRSN 3527) [Search protein sequence]
LLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQV
DRHIQLIVMDLSESKDEPMVFINPKVTPLTTQPYEEGCLSVPQIYDKVDR
PSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQ
RAREKVEKIVRQREREKVA
3D structure
PDB6jew K3U bound crystal peptide deformylase from Acinetobacter baumanii
ChainB
Resolution2.0 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C92 L93 H134 E135 H138
Catalytic site (residue number reindexed from 1) G44 Q49 C88 L89 H130 E131 H134
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C92 H134 H138 C88 H130 H134
BS02 K3U B G44 I45 G46 Q51 E90 G91 C92 L93 Y99 C131 H134 E135 G42 I43 G44 Q49 E86 G87 C88 L89 Y95 C127 H130 E131
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:6jew, PDBe:6jew, PDBj:6jew
PDBsum6jew
PubMed
UniProtB0VNL8|DEF_ACIBS Peptide deformylase (Gene Name=def)

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