Structure of PDB 6jbn Chain B

Receptor sequence
>6jbnB (length=390) Species: 90322 (Sphingomonas sp. A1) [Search protein sequence]
AGTQVADAPQSDNTQQRHDYLGAHQAGVVTPRPAAGLLASFDVLAEDRKE
LERLFRTLTERIAFLTQGGPQVDPDPRLPPTGSGILGPVVTPDALTITLS
VGDSLFDDRFGLASVKPRHLQRMTAFPNDALDAALCHGDLSIQFCANTPD
TNIHALRDILKNLPDLLVLLWKQEGTVPPVAHKPGTPSESARNFLGFRDG
SANPDSADAREMNRIVWLQADSAEPAWAAGGSYQAVRIIRNFVERWDRTP
LGEQERIMGRAKPTGAPLDGGRTEHDVPDYAVDPKGTRTPLDSHIRLANP
RTSASQANLILRRPFNYSNGVTKSGQLEMGLLFIAYQADLDAGFITVQKR
LDGEPLEEYIKPIGGGYFFTLPGITRADDYFGRSLLDASA
3D structure
PDB6jbn Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer
ChainB
Resolution2.3 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HEM B N242 R247 G249 S250 A251 I288 M307 H343 I344 A347 N348 R350 R361 L380 F382 F393 V396 Q397 L400 N193 R198 G200 S201 A202 I239 M258 H294 I295 A298 N299 R301 R312 L331 F333 F344 V347 Q348 L351
BS02 OXY B D248 R361 D199 R312
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 29 09:11:48 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6jbn', asym_id = 'B', title = 'Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6jbn', asym_id='B', title='Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0004601,0020037,0033212', uniprot = '', pdbid = '6jbn', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004601,0020037,0033212', uniprot='', pdbid='6jbn', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>