Structure of PDB 6i8k Chain B

Receptor sequence
>6i8kB (length=361) Species: 457428 (Streptomyces lividans TK24) [Search protein sequence]
SAVPFHGAHQAGIATPVQDRLHFAAFDVTTEDRAAFVALLKEWTAAARRL
TAGHAVGEGAYGGLPEAPPDDTGEALGLKPSRLTLTIGFGPSLFTRFGLA
DLRPEALADLPKFPGDNLDRARSGGDLCVQACADDPQVAVHAIRNLARIG
FGKVVVRWSQLGFGKTSSTTPDKQTPRNLLGFKDGTRNIAGTEKDRLDRF
VWAAEKDGTPWMTGGSYLVARRIRMHIETWDRASLQEQEDVFGRDKGEGA
PVGKAKERDEPFLKAMKPDAHVRLAHPDSNGGATLLRRGYSFTDGTDGLG
RLDAGLFFLAYQRDIRTGFVPVQRNLATDALNEYIQHVGSAVFAVPPGVR
DADDWWGSTLF
3D structure
PDB6i8k Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins.
ChainB
Resolution1.98 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HEM B K238 D239 G240 T241 R242 M280 F297 H326 V327 A330 H331 R342 L361 F363 F374 Q378 L381 L386 K183 D184 G185 T186 R187 M225 F242 H271 V272 A275 H276 R287 L306 F308 F319 Q323 L326 L331
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 01:42:37 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6i8k', asym_id = 'B', title = 'Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6i8k', asym_id='B', title='Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0004601,0020037,0033212', uniprot = '', pdbid = '6i8k', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004601,0020037,0033212', uniprot='', pdbid='6i8k', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>