Structure of PDB 6hmf Chain B

Receptor sequence
>6hmfB (length=442) Species: 272844 (Pyrococcus abyssi GE5) [Search protein sequence]
VVLDKYGYPILYYSKYEDVVIEWNPSVTPVQIEKNYEVKFDVRQVKLRPP
KVEAYASLFKSRLSKLKRILRENPEISNVVDIGKLNYVSGDEEVTIIGLV
NSKRETNRGLIFEVEDKTGIVKVFLPKDSEDYREAFKVLPDAVVAFKGFY
SKKGIFFANKFYLPDVPLYRKQKPPLEEKVYAILISDIHVGSREFCEKAF
LKFLEWLNGHVESKEEEEIVSRVKYLIIAGDVVDGIGIYPGQYSDLVIPD
IFDQYEALANLLANVPEHITMFIGPGNADAARPAIPQPEFYKEYAKPIYK
LKNAIIISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGKPGLPMVELLKMR
HLAPTFGGKVPIAPDPEDLLVIEEVPDLVQMGHVHVYDAVVYRGVQLVNS
ATWQAQTEFQKMVNIVPTPAKVPVVDVESARVVKVLDFSGWC
3D structure
PDB6hmf Structure of the DP1-DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases.
ChainB
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
3.1.11.1: exodeoxyribonuclease I.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FE B D360 H362 D404 H562 D187 H189 D231 H385
BS02 ZN B D404 N450 H497 H560 D231 N277 H324 H383
BS03 CA B E544 E550 E367 E373
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0008408 3'-5' exonuclease activity
Biological Process
GO:0006260 DNA replication

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Molecular Function
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Biological Process
External links
PDB RCSB:6hmf, PDBe:6hmf, PDBj:6hmf
PDBsum6hmf
PubMed30657780
UniProtQ9V2F3|DP2S_PYRAB DNA polymerase II small subunit (Gene Name=polB)

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