Structure of PDB 6gyf Chain B

Receptor sequence
>6gyfB (length=366) Species: 1359 (Lactococcus cremoris) [Search protein sequence]
KSKLSGKNIGIYFGTFAPLHTGHQQQIYKCASLNDGVLLVVSGYDNDRGA
QIGLPLEKRFRYLREAFNDEENIKVSMLNENDLPEMPNGWDEWANRLFEL
IHHNTLENDLSVTFYVGELEYAAELKKRFPADGNQYAVEIADRHDISLSA
TQIRENPQEHWTHINRVFRRHFSKVVTVMGSASTGKTTLVRRLARSINAP
FSEEYAREYEEAFNIDDDELKMDDYARMITGQYDANSREVNSPANQGIVF
LDTDAIVTRVYAKLYLPKEDFEQLEPLFRKTIADERMDLILVIPPITEFR
HMEWEESRHEFHEELMRQLAEFGLLDKVVILDDEGDHRDQEGYLTRYHHA
IDAVHEYTGVKIERLS
3D structure
PDB6gyf Structural and Functional Characterization of NadR fromLactococcus lactis.
ChainB
Resolution2.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NMN B K65 R177 H178 Y240 S244 N248 R293 K58 R170 H171 Y233 S237 N241 R286
BS02 MG B K270 E333 K263 E321
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Dec 2 06:44:11 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6gyf', asym_id = 'B', title = 'Structural and Functional Characterization of NadR fromLactococcus lactis.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6gyf', asym_id='B', title='Structural and Functional Characterization of NadR fromLactococcus lactis.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0000309,0003824,0009058,0009435,0050262', uniprot = '', pdbid = '6gyf', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000309,0003824,0009058,0009435,0050262', uniprot='', pdbid='6gyf', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>