Structure of PDB 6gya Chain B

Receptor sequence
>6gyaB (length=481) Species: 61169 (Alicyclobacillus sp.) [Search protein sequence]
GDNGTMMQYFEWYLPNDGTLWTKMGSDASHLKSIGITGVWFPPAYKGQSQ
SDVGYGVYDMYDLGEFNQKGTVRTKYGTKAQLQSAITSLHNNGIQAYGDV
VLNHRMGADATETISAVEVNPSNRNQVTSGAYNISAWTDFEFPGRGNTYS
SFKWHSYYFDGVDWDQSRQLSGKIYQIQGKAWDWEVDSENGNYDYLMGAD
IDYDHPDVQTEVKNWGKWFVNTLNLDGVRLDAVKHIKFDYMSSWLSSVKS
TTGKSNLFAVGEYWNTSLGALENYENKTNWSMSLFDVPLHMNFQAAANGG
GYYDMRNLLNNTMMKNHPIQAVTFVDNHDTEPGQALQSWVSDWFKPLAYA
TILTRQEGYPCVFYGDYYGIPSQSVSAKSTWLDKQLSARKSYAYGTQHDY
LDNQDVIGWTREGDSAHAGSGLATVMSDGPGGSKTMYVGTAHAGQVFKDI
TGNRTDTVTINSAGNGTFPCNGGSVSIWVKQ
3D structure
PDB6gya The structure of the AliC GH13 alpha-amylase from Alicyclobacillus sp. reveals the accommodation of starch branching points in the alpha-amylase family.
ChainB
Resolution2.95 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLC B E192 K237 E189 K234
BS02 GLC B L199 E265 L196 E262
BS03 CA B N106 D197 D203 H238 N103 D194 D200 H235
BS04 CA B D163 A184 D186 D205 D207 D160 A181 D183 D202 D204
BS05 CA B G304 Y305 Y306 Q407 D408 D431 G301 Y302 Y303 Q404 D405 D428
BS06 GLC B Q98 F261 Y362 Q95 F258 Y359
BS07 BGC B N128 W187 N125 W184
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005509 calcium ion binding
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6gya, PDBe:6gya, PDBj:6gya
PDBsum6gya
PubMed30644839
UniProtA0A3P8MUS3

[Back to BioLiP]