Structure of PDB 6gr0 Chain B

Receptor sequence
>6gr0B (length=167) Species: 9606 (Homo sapiens) [Search protein sequence]
LIPAPPLSKVPLQQNFQDNQFHGKWYVVGFAENIQDPPKMIATIYELKED
KSYNVTNVASNWEKCTYRIKTFVPGSQPGEFTLGEIKSRPGMTSYLVRVV
STNYNQHAMVFFKTVVQNREKFWITLYGRTKELTSELKENFIRFSKSLGL
PENHIVFPVPIDQCIDG
3D structure
PDB6gr0 Reprogramming Human Siderocalin To Neutralize Petrobactin, the Essential Iron Scavenger of Anthrax Bacillus.
ChainB
Resolution2.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 F8W B F36 I52 N68 R79 I80 K81 R100 Y106 K132 W134 F30 I41 N57 R68 I69 K70 R89 Y95 K121 W123 MOAD: Kd=88pM
BS02 F8W B E143 F168 E132 F157 MOAD: Kd=88pM
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0036094 small molecule binding
GO:0042802 identical protein binding
GO:0140315 iron ion sequestering activity
GO:1903981 enterobactin binding
Biological Process
GO:0006826 iron ion transport
GO:0006915 apoptotic process
GO:0015891 siderophore transport
GO:0042742 defense response to bacterium
GO:0045087 innate immune response
GO:0120162 positive regulation of cold-induced thermogenesis
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0031410 cytoplasmic vesicle
GO:0035580 specific granule lumen
GO:0060205 cytoplasmic vesicle lumen
GO:0070062 extracellular exosome

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Molecular Function
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Cellular Component
External links
PDB RCSB:6gr0, PDBe:6gr0, PDBj:6gr0
PDBsum6gr0
PubMed30063283
UniProtP80188|NGAL_HUMAN Neutrophil gelatinase-associated lipocalin (Gene Name=LCN2)

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