Structure of PDB 6fu1 Chain B

Receptor sequence
>6fu1B (length=411) Species: 6183 (Schistosoma mansoni) [Search protein sequence]
SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDS
PSRMYEAVTAFHSTEYVDALKKLQMLHCELTADDELLMDSFSLNCPGFPS
VFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLND
IVLAIHRLVSSQTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGF
FPGTGTWPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVI
QPSYVVVQCGADCLATDPHRIFRLTNFYPDSECSLSGYLYAIKKILSWKV
PTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRY
GPDFELDIDYFPHETLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLY
NLTGMGSLVPR
3D structure
PDB6fu1 A Novel Class of Schistosoma mansoni Histone Deacetylase 8 (HDAC8) Inhibitors Identified by Structure-Based Virtual Screening and In Vitro Testing.
ChainB
Resolution1.548 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.5.1.98: histone deacetylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B D186 H188 D285 D171 H173 D262
BS02 E7Q B F21 W140 H141 H142 G150 F151 C152 D186 H188 G339 Y341 F20 W134 H135 H136 G144 F145 C146 D171 H173 G308 Y310 MOAD: ic50=4.4uM
BS03 E7Q B F300 C314 F277 C283 MOAD: ic50=4.4uM
Gene Ontology
Molecular Function
GO:0004407 histone deacetylase activity
GO:0046872 metal ion binding
Biological Process
GO:0000122 negative regulation of transcription by RNA polymerase II
GO:0006338 chromatin remodeling
Cellular Component
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6fu1, PDBe:6fu1, PDBj:6fu1
PDBsum6fu1
PubMed29498707
UniProtA5H660

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