Structure of PDB 6epy Chain B

Receptor sequence
>6epyB (length=669) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence]
AFETTTPPEPPQFPAEGKINYVARDTILEFKALPSYSEPDWITEKFEKAG
KLPPLKERLPEEPLVYKTGNMPDGVGVYGDTMRHVVGGRPEGWNYIAGQS
QGWGGIDIALSECLTRTAPLFQVDAKDTEPLPNLAKSWEWSEDGHTLTMH
LVKGAKWSDGEAFNADDVMFYWEDAVVDPNVSPLGGGASPEAFGEGTTLK
KIDDYTVEWTFKAAFPKQYLYTMAYPSFCPGPSHILKPQHPKYSKNTYNQ
FKNAFPPEYMNMPVMGAWVPVSYRPDDLIVLRRNPYYWKVDEKGQQLPYL
NEVHYKLSTWADRDVQAVAGSGDFSNLEQPENFVASLKRAADPNAPARLA
FGPRLIGYNLQMNFSANGWGNPDERGQAIRELNRNEVFRQAVTSALDRKA
IGDSLVKGPFTAIYPGGISSGTSFYDRASTVYYPFNLEGAKAALASIGLK
DTDGDGFLNFPKETLGGRNVEITLLVNNGYATDKSLAEGLVGQMAKLGLR
VVIHSLDSNQRDAAHYGGQFDWLVRRNSTELSSVVQNTEQLAPVGPRTSW
NHRSPEGKELDLMPFEKEMADIVRKFISSQDNAERADLMKQYQKVYTQNL
YTIGLTEYPGALIVNKRFSNVPQGTPIFMFNWAEDAIIRERLWVAADKQG
KYELFPQQLPGKPGEGGPI
3D structure
PDB6epy The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
ChainB
Resolution2.04 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FRU B R533 W639 R526 W632
BS02 GLC B W110 N484 Y487 S515 D519 W103 N477 Y480 S508 D512
BS03 GLA B G111 W317 R320 N333 E335 Y487 W639 E641 G104 W310 R313 N326 E328 Y480 W632 E634
BS04 CA B E168 A169 E161 A162
BS05 CA B D458 D460 D462 F464 N466 N476 D451 D453 D455 F457 N459 N469
BS06 CA B T418 A419 I420 T411 A412 I413
BS07 CA B A182 V183 D185 V188 A175 V176 D178 V181
BS08 CA B W48 Y85 N308 W41 Y78 N301
BS09 CA B Y280 P282 D283 Y273 P275 D276
BS10 CA B S148 E149 D150 S141 E142 D143
BS11 CA B P553 L567 P546 L560
BS12 CA B E146 W147 E139 W140
BS13 CA B K133 D134 N589 R592 K126 D127 N582 R585
BS14 CA B Y255 N256 K259 Y248 N249 K252
BS15 CA B Y43 K63 Y36 K56
BS16 CA B D47 W48 D40 W41
BS17 CA B V84 A652 A653 V77 A645 A646
BS18 CA B T429 S430 T422 S423
BS19 CA B T254 Y255 T247 Y248
BS20 CA B P248 S251 P241 S244
BS21 CA B V413 K414 V406 K407
BS22 CA B W376 G377 P562 W369 G370 P555
BS23 CA B P571 F572 P564 F565
BS24 CA B K414 G415 K407 G408
BS25 CA B W100 Y266 M267 N268 M269 P277 W93 Y259 M260 N261 M262 P270
BS26 CA B S107 Q108 G109 W110 D114 S100 Q101 G102 W103 D107
BS27 CA B Q106 N260 F262 P263 Q99 N253 F255 P256
BS28 CA B A324 G327 G329 N622 A317 G320 G322 N615
BS29 CA B P264 E265 Y266 M267 Y280 P257 E258 Y259 M260 Y273
BS30 CA B R65 A162 K163 Y293 R58 A155 K156 Y286
BS31 CA B E69 K143 V159 K160 E62 K136 V152 K153
BS32 CA B Y102 I103 Y95 I96
BS33 CA B G111 R320 F331 E641 G104 R313 F324 E634
BS34 CA B K133 D134 Q225 Y228 V542 K126 D127 Q218 Y221 V535
BS35 CA B F37 K143 F30 K136
BS36 CA B R31 P139 W145 R24 P132 W138
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