Structure of PDB 6eem Chain B

Receptor sequence
>6eemB (length=488) Species: 3469 (Papaver somniferum) [Search protein sequence]
QNPLDPDEFRRQGHMIIDFLADYYKNVEKYPVRSQVEPGYLKKRLPESAP
YNPESIETILEDVTNDIIPGLTHWQSPNYFAYFPSSGSIAGFLGEMLSTG
FNVVGFNWMSSPAATELESIVMNWLGQMLTLPKSFLFSSDGGGGGVLQGT
TCEAILCTLTAARDKMLNKIGRENINKLVVYASDQTHCALQKAAQIAGIN
PKNVRAIKTSKATNFGLSPNSLQSAILADIESGLVPLFLCATVGTTSSTA
VDPIGPLCAVAKLYGIWVHIDAAYAGSACICPEFRHFIDGVEDADSFSLN
AHKWFFTTLDCCCLWVKDSDSLVKALSTSPEYLKNKQVIDYKDWQIALSR
RFRSMKLWLVLRSYGVANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRT
FAMVCFRLKPTAIFKQKIVDNDYIEDQTNEVNVKLLESVNASGKIYMTHA
VVGGVYMIRFAVGATLTEERHVTGAWKVVQEHTDAILG
3D structure
PDB6eem Structural basis for divergent and convergent evolution of catalytic machineries in plant aromatic amino acid decarboxylase proteins.
ChainB
Resolution2.61001 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.1.1.25: tyrosine decarboxylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 0PR B F122 Y350 L371 S372 F106 Y332 L348 S349
BS02 TYR B W90 Y98 F99 P100 H320 X321 W74 Y82 F83 P84 H302 X303
Gene Ontology
Molecular Function
GO:0004837 tyrosine decarboxylase activity
GO:0016830 carbon-carbon lyase activity
GO:0016831 carboxy-lyase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0006520 amino acid metabolic process
GO:0019752 carboxylic acid metabolic process
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6eem, PDBe:6eem, PDBj:6eem
PDBsum6eem
PubMed32371491
UniProtO82415|TYDC_PAPSO Tyrosine decarboxylase (Gene Name=TYDC)

[Back to BioLiP]