Structure of PDB 6e6b Chain B

Receptor sequence

>6e6bB (length=625) Species: 10090 (Mus musculus) [Search protein sequence]

QIRYKIPEEMPTGSVVGNLAKDLGFSVQELPTRKLRISSEKPYFSVSSES
GELLVSSRLDREQICGKKLMCALEFEAVAENPLNFYHLSVELEDINDHTP
KFAHTSFELQISESSKPGTRFILGSAHDADIGTNSLQNYQLSPNDHFSLV
NKEKSDGSKYPEMILKTALDREKQKLYHLTLTALDFGHPPLNSTAQIQVL
VTDANDNPPVFSQDIYRVSLPENVYPGTTVLRVVATDQDEGVNSEITFSF
SQFNLDSNTGEITTLHTLDFEEVKEYSLVLEAKDGGGMIAQCTVEIEVLD
ENDNVPEVLFQSLPDLIMEDAEPGTYIALLKTRDKDSGRNGEVICKLEGG
APFKILTSSGNTYKLVTDGVLDREQNPEYNITIRATDKGDPPLSSSSSVT
LHIGDVNDNAPVFTKVSYLVHVAENNPPGASIAQVSASDPDLGANGQVTY
YIIASDLEPESLWSYVTINAQSGVLFAQRAFDHEQLRSFQLTLQARDHGS
PTLSANVSMRLLVGDRNDNAPRVLYPTLEPDGSALFDMVPRSAEPGYLVT
KVVAVDADSGHNAWLSYHVLQASDPGLFSLGLRTGEVRTARALGDRDSAR
QRLLVAVRDGGQPPLSATATLHLIF

3D structure

PDB

6e6b Visualization of clustered protocadherin neuronal self-recognition complexes.

Chain

Resolution

4.52 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CA	B	E9 E10 D61 E63 D98	E8 E9 D60 E62 D97
BS02	CA	B	E9 E63 D95 I96 D98 D131	E8 E62 D94 I95 D97 D130
BS03	CA	B	N97 H99 D129 D131 N135 D186	N96 H98 D128 D130 N134 D185
BS04	CA	B	E114 D171 D207	E113 D170 D206
BS05	CA	B	E114 E173 D204 A205 D207 D240	E113 E172 D203 A204 D206 D239
BS06	CA	B	N206 N208 D238 D240 N244 D291	N205 N207 D237 D239 N243 D284
BS07	CA	B	E223 D276 E278 D310	E222 D269 E271 D303
BS08	CA	B	E223 E278 D307 E308 D310 D343	E222 E271 D300 E301 D303 D336
BS09	CA	B	N309 N311 D341 D343 N347 D394	N302 N304 D334 D336 N340 D387
BS10	CA	B	E326 D379 E381 D415	E319 D372 E374 D408
BS11	CA	B	E326 E381 D412 V413 D415 D448	E319 E374 D405 V406 D408 D441
BS12	CA	B	N414 D446 D448 N452 D504	N407 D439 D441 N445 D497
BS13	CA	B	E431 D489 E491 D525	E424 D482 E484 D518
BS14	CA	B	E431 H490 E491 D522 R523 D525 D565	E424 H483 E484 D515 R516 D518 D558
BS15	CA	B	N524 N526 D563 D565 N569 D616	N517 N519 D556 D558 N562 D609

Gene Ontology

	Molecular Function
GO:0005509	calcium ion binding

	Biological Process
GO:0007155	cell adhesion
GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules

	Cellular Component
GO:0005886	plasma membrane
GO:0016020	membrane

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6e6b, PDBe:6e6b, PDBj:6e6b
PDBsum	6e6b
PubMed	30971825
UniProt	Q91XX6

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