Structure of PDB 6dsp Chain B

Receptor sequence
>6dspB (length=326) Species: 1345695 (Clostridium saccharobutylicum DSM 13864) [Search protein sequence]
VTVTFIPKLTGNAFFESANKGAQKYSEQWGFKVDYEGDANASAASQVSVI
NKAVQQGTNAICLSSVDAAGVKDALKAAADAGVTVTTWDSDVDPSVRKVM
VSQGTPEQLGQMLVQMGYDSLKERGKDPEKDAIKYCWHYSNATVTDQNSW
QVEGEKYIKSKYPNWQNVAPDNYYSNQDAEQAISVGESILSAHSDIDLII
CNDSTALPGQAQAAQNKGLTAKNVTITGFASPNSMKQYCNDGILTRWGLW
DCGIQGAMGCYMAYYIASGNSVKVGDKIEIPTVGTVEVMPNSVLDPKADD
SDTSSGVVLLPERTIFTKDNMNNYDF
3D structure
PDB6dsp Identification of novel autoinducer-2 receptors inClostridiareveals plasticity in the binding site of the LsrB receptor family.
ChainB
Resolution1.37 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PAV B K29 F35 F36 D110 D167 Q168 W171 D224 S225 W271 K8 F14 F15 D89 D146 Q147 W150 D203 S204 W250 MOAD: Kd=0.81uM
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space

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Molecular Function
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Cellular Component
External links
PDB RCSB:6dsp, PDBe:6dsp, PDBj:6dsp
PDBsum6dsp
PubMed30696769
UniProtU5MRH9

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