Structure of PDB 6d73 Chain B

Receptor sequence
>6d73B (length=1256) Species: 7955 (Danio rerio) [Search protein sequence]
LASWIKENIKKKEQWDKHRHVRETPTDAFGDISFGGLGQKTGKYVRVSSD
TSCENLYQLMTEQWKLRSPNLLISVTGGAKNFYIKTHLKDKFRRGLIKVA
QTTGAWILTGGTHAGVMKHVGMAVRDYTLSSGSMEGQIVVIGVAPWGVIH
NRSTLIHPEGRFPAYYSLDEQGQGRLSCLDINHTHFLLVDDGTQGHYGVE
IELRARLEKLISKLSLGGVTIPVVCVVLDGGPGTLNTIYNSMLNHTPCVV
LEGSGRLADVIAHVASVPVSKVTMALINRLLKRFFMQEYKNFTELQIIEW
TKKIQDILRMPHLLTVFRIDEDKNYDVDVAILQALLKASRSDEHAGRHCW
ERQLELAVAWNRVDIAESEIFTEESQWTSSDLHPAMFSALVGDKPEFVRL
LLENGVCVREFLEREETLCELYSHLPSCFFLRKLAKRVQEPLPGSRKVCL
SHVSEEVRHLLGSFTQPLYIASRYDTVWDPGRDLFLWAVVQNNRELAEIG
WEQCRDCIAAALAASKILRKLAQESGEDDSEEATEMLELANHYEKQAIGV
FSECHSWDAQRAQKLLIRISPSWGRSTCLWLALEAHDKSFIAHSGVQALL
TQIWCGELSVDNPHWKVLLCMIFFPLIYTGFLTFRRDEDIQRQAERTEQQ
KNCSSRLMSFLKSPQVKFYWNIASYFGFLWLFAVVLMIDFQTSPSWRELL
LYVWLTSLVCEEIRQLYHDGFRRKAKMYIKDLWNILDVLSIVLFIAGLIC
RLQASDTVFYIGKVILCIDFIIFCLRLMAIFSISRTLGPKIIIVRRMMLD
LFFFMFLLSIWVVAYGVAKQGILIENEERLNWIIRGAVYEPYITIFGNFP
TNIDNTLFDISSCSVNASDPLKPKCPMLNADNTPVFPEWLTIMMLCVYLL
FANILLLNLLIAIFNYTFQEVQDNTDTIWKFQRYELIKEYHSRPALPPPF
ILLSHLILFIRGVFLRHKNFRQELEQTEEEELLSWEAYMKDNYLASTRQD
ESQSVEHRIHDTAEKVGAMSELLEREQEMVAAAAAAAAAAAAAAAAAAAA
AAEEAPHMFARQLQYPDSTVRRFPVPEEKVSWEVNFSPYQPPVYNQQDKH
RNPGGRTGIRGKGALNTLGPNHILHPIFTRWRDAEHKVLEFLAVWEDAEK
RWALLGGPAQPDLAQVLERILGKKLKTLLKAGEEVYKGYVDDSRNTDNAW
VETSIITLHTPLMADLNHMVESSLSSHQPLQWREVSSDACRCSYQREALR
QIAHHH
3D structure
PDB6d73 Visualizing structural transitions of ligand-dependent gating of the TRPM2 channel.
ChainB
Resolution3.8 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B E857 Q860 N883 D886 E712 Q715 N734 D737
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Dec 2 13:09:48 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6d73', asym_id = 'B', title = 'Visualizing structural transitions of ligand-dependent gating of the TRPM2 channel.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6d73', asym_id='B', title='Visualizing structural transitions of ligand-dependent gating of the TRPM2 channel.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0005216,0006811,0016020,0055085', uniprot = '', pdbid = '6d73', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005216,0006811,0016020,0055085', uniprot='', pdbid='6d73', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>