Structure of PDB 6cp6 Chain B

Receptor sequence
>6cp6B (length=505) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
KAQPTEVSSILEERIGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEEL
VEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPG
LLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKA
VDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCV
YVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAAS
IGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLH
SRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFL
EAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAA
FAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGH
LDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATE
SFVAT
3D structure
PDB6cp6 High-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane.
ChainB
Resolution3.6 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) K177 Q210 K211 R375
Catalytic site (residue number reindexed from 1) K173 Q206 K207 R371
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP B Q174 T175 G176 K177 T178 A179 F359 R364 Q432 N433 Q434 Q170 T171 G172 K173 T174 A175 F355 R360 Q428 N429 Q430
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0032559 adenyl ribonucleotide binding
GO:0043531 ADP binding
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Biological Process
GO:0006754 ATP biosynthetic process
GO:0015986 proton motive force-driven ATP synthesis
GO:0046034 ATP metabolic process
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005758 mitochondrial intermembrane space
GO:0005829 cytosol
GO:0016020 membrane
GO:0042645 mitochondrial nucleoid
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
GO:0045267 proton-transporting ATP synthase, catalytic core

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6cp6, PDBe:6cp6, PDBj:6cp6
PDBsum6cp6
PubMed29650704
UniProtP07251|ATPA_YEAST ATP synthase subunit alpha, mitochondrial (Gene Name=ATP1)

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