Structure of PDB 6cdo Chain B

Receptor sequence

>6cdoB (length=219) Species: 10090 (Mus musculus) [Search protein sequence]

DVLMTQTPLSLPVSLGGQASISCRSSQSVVYSDGDTYLEWYLQKPGQSPK
LLIYKVSRRFSGVPDRFSGSGSGTDFTLKISRVETEDLGVYYCFQGSHVP
YTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAK
VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACE
VTHQGLSSPVTKSFNRGEC

3D structure

PDB

6cdo Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.

Chain

Resolution

2.099 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	Y31 Y37 E39 G96 Y101	Y31 Y37 E39 G96 Y101

External links

PDB	RCSB:6cdo, PDBe:6cdo, PDBj:6cdo
PDBsum	6cdo
PubMed	29867235

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