Structure of PDB 6cdm Chain B

Receptor sequence

>6cdmB (length=218) Species: 10090 (Mus musculus) [Search protein sequence]

GVLMTQTPLSLPVRLGDQASISCRSSQSIVYSNGNTYLEWYLQRPGQSPK
LLIYKVSNRFSGVPDRVSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVP
YTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAK
VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACE
VTHQGLSSPVTKSFNRGE

3D structure

PDB

6cdm Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.

Chain

Resolution

2.408 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	Y27D Y32 E34 G91 Y96	Y31 Y37 E39 G96 Y101

External links

PDB	RCSB:6cdm, PDBe:6cdm, PDBj:6cdm
PDBsum	6cdm
PubMed	29867235

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