Structure of PDB 6cdd Chain B

Receptor sequence
>6cddB (length=456) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
PWEVVRQSPLDDRLDKLDGKIPRKRGAMCRHGPKGMCDYCTPLDPFNPQY
LEEKKIKYMSVHAYMRKINSATNRPELGSSFIPPLVEPYYRVKRDCPSGH
PQWPEGICTKCQPSAITLQPQPFRMVDHVEFASPQIIDRFLDAWRRTGVQ
RLGILYGRYLEYDAVPLGIKAVVEAIYEPPQVDEIDGITLNPWENEQEVN
QVAKYCGLEQVGVIWTDLLDAGKGDGSVVCKRHADSYFLAAQEIVFAARL
QAQHPKPSKWSDTGRFGSNFVTCVVSGNEQGEISISAYQMSNDAVEMVRA
DIIEPSADPTLMLVREETRYIPEVFYRKINEYGANVLENAKPAFPVEYLF
VTLTHGFPDSPSPLFTDNIFPIENREYVGEAQEVSAVAKALKVHEADAPM
NVSDFHLLCFIHQMSVLSKEEEALLCRVATLHDLAESFQLRSTTGWQTLH
MILQST
3D structure
PDB6cdd Structure of the Cdc48 ATPase with its ubiquitin-binding cofactor Ufd1-Npl4.
ChainB
Resolution2.58234 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C160 H162 C168 C171 C29 H31 C37 C40
BS02 ZN B H231 C239 C242 H100 C108 C111
Gene Ontology
Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process

View graph for
Biological Process
External links
PDB RCSB:6cdd, PDBe:6cdd, PDBj:6cdd
PDBsum6cdd
PubMed29967539
UniProtG0S0B4

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