Structure of PDB 6cd1 Chain B

Receptor sequence
>6cd1B (length=451) Species: 3880 (Medicago truncatula) [Search protein sequence]
LDYGLSEADPDVHAIINKEKDRQFRSLELIASENFTSKAVMEAVGSCLTN
KYSEGLPGKRYYGGNEHIDELEILCQQRALAAFHLDGDKWGVNVQPLSGS
PANFAVYTAILKPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMP
YRLDESTGVIDYDMLEKTAALFRPKLIIAGASAYPRDIDYARFRKIADSV
GAFLMMDMAHVSGLIAASVLADPFEFVDIVTTTTHKSLRGPRGGMIFFKK
DAVHGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKYAQSPDFKNYQNQ
VVANCRALANRLVEHEYKLVSGGSDNHLVLVDLRPSGIDGARVEKILDMA
SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLGEKEFELIADLIHEGVR
ISLEAKSLVSGTKVQDFLNFVLAPEFPLGDKVSNLRRKVEALATQYPIPG
V
3D structure
PDB6cd1 Chloroplastic Serine Hydroxymethyltransferase FromMedicago truncatula: A Structural Characterization.
ChainB
Resolution1.91 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) Y134 E136 D289 T315 K318 R324
Catalytic site (residue number reindexed from 1) Y52 E54 D207 T233 K236 R242
Enzyme Commision number 2.1.2.1: glycine hydroxymethyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLS B Y134 E136 Y144 G354 Y52 E54 Y62 G272
BS02 PLG B S114 S180 G181 S182 H209 A263 S264 D289 A291 H292 H317 K318 R454 S32 S98 G99 S100 H127 A181 S182 D207 A209 H210 H235 K236 R372
Gene Ontology
Molecular Function
GO:0004372 glycine hydroxymethyltransferase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0019264 glycine biosynthetic process from serine
GO:0035999 tetrahydrofolate interconversion

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Molecular Function
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Biological Process
External links
PDB RCSB:6cd1, PDBe:6cd1, PDBj:6cd1
PDBsum6cd1
PubMed29868052
UniProtG7ILW0

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