Structure of PDB 6bqd Chain B

Receptor sequence
>6bqdB (length=129) Species: 9606 (Homo sapiens) [Search protein sequence]
DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLE
TIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY
QTLTEYDEHLTQLEKDICTAKEAALEEAE
3D structure
PDB6bqd Water molecules in protein-ligand interfaces. Evaluation of software tools and SAR comparison.
ChainB
Resolution2.136 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.3.1.48: histone acetyltransferase.
2.7.11.1: non-specific serine/threonine protein kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 69G B W1526 P1527 F1528 V1532 N1533 F1536 N1583 Y1589 W25 P26 F27 V31 N32 F35 N82 Y88 MOAD: ic50=0.41uM
Gene Ontology
Molecular Function
GO:0004402 histone acetyltransferase activity
GO:0016251 RNA polymerase II general transcription initiation factor activity
GO:0017025 TBP-class protein binding
Biological Process
GO:0006366 transcription by RNA polymerase II
Cellular Component
GO:0005669 transcription factor TFIID complex

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Cellular Component
External links
PDB RCSB:6bqd, PDBe:6bqd, PDBj:6bqd
PDBsum6bqd
PubMed30756207
UniProtP21675|TAF1_HUMAN Transcription initiation factor TFIID subunit 1 (Gene Name=TAF1)

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