Structure of PDB 6bec Chain B

Receptor sequence
>6becB (length=541) Species: 10254 (Vaccinia virus WR) [Search protein sequence]
MNNTIINSLIDSIKRSNVFAVDSQIPTLYMPQYISLSGVMTNDNQAIASF
EIRDQYITALNHLVLSLELPEVKGMGRFGYVPYVGYKCINHVSISSCNGV
IWEIEGEELYNNCINNTIALKHSGYSSELNDISIGLTPNDTIKEPSTVYV
YIKTPFDVEDTFSSLKLSDSKITVTVTFNPVSDIVIRDSSFDFETFNKEF
VYVPELSFIGYMVKNVQIKPSFIEKPRRVIGQINQPTATVTEVHAATSLS
VYTKPYYGNTDNKFISYPGYSQDEKDYIDAYVSRLLDDLVIVSDGPPTGY
PESAEIVEVPEDGIVSIQDADVYVKIDNVPDNMSVYLHTNLLMFGTRKNS
FIYNISKKFSAITGTYSDATKRTIFAHISHSINIIDTSIPVSLWTSQRNV
YNGDNRSAESKAKDLFINDPFIKGIDFKNKTDIISRLEVRFGNDVLYSEN
GPISRIYNELLTKSNNGTRTLTFNFTPKIFFRPTTITANVSRGKDKLSVR
VVYSTMDVNHPIYYVQKQLVVVCNDLYKVSYDQGVSITKIM
3D structure
PDB6bec Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
ChainB
Resolution2.91 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 RBT B V24 F168 F486 V21 F162 F480 PDBbind-CN: -logKd/Ki=4.01,Kd=98uM
Gene Ontology
Molecular Function
GO:0042802 identical protein binding
Biological Process
GO:0046677 response to antibiotic
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6bec, PDBe:6bec, PDBj:6bec
PDBsum6bec
PubMed30068608
UniProtP68440|PG125_VACCW Scaffold protein OPG125 (Gene Name=OPG125)

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