Structure of PDB 6b23 Chain B

Receptor sequence
>6b23B (length=284) Species: 53369 (Dubowvirus dv80alpha) [Search protein sequence]
PDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTF
WADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQ
FFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFT
QDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDS
LDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKN
EDGTPVNLFEQDMVALRATMHVALHIADDKAFAK
3D structure
PDB6b23 Competing scaffolding proteins determine capsid size during mobilization ofStaphylococcus aureuspathogenicity islands.
ChainB
Resolution3.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B Q49 M52 E53 Q59 G61 Y63 N194 A195 Q24 M27 E28 Q34 G36 Y38 N169 A170
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6b23, PDBe:6b23, PDBj:6b23
PDBsum6b23
PubMed28984245
UniProtA4ZFB3|CAPSD_BP80A Major capsid protein (Gene Name=gp47)

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