Structure of PDB 6b0x Chain B

Receptor sequence
>6b0xB (length=284) Species: 53369 (Dubowvirus dv80alpha) [Search protein sequence]
PDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTF
WADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQ
FFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFT
QDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDS
LDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKN
EDGTPVNLFEQDMVALRATMHVALHIADDKAFAK
3D structure
PDB6b0x Competing scaffolding proteins determine capsid size during mobilization ofStaphylococcus aureuspathogenicity islands.
ChainB
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B L48 Q49 M52 E53 Q59 G61 Y63 N194 P230 I253 L23 Q24 M27 E28 Q34 G36 Y38 N169 P205 I228
BS02 peptide B E50 E129 P132 K235 E25 E104 P107 K210
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6b0x, PDBe:6b0x, PDBj:6b0x
PDBsum6b0x
PubMed28984245
UniProtA4ZFB3|CAPSD_BP80A Major capsid protein (Gene Name=gp47)

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