Structure of PDB 6ab6 Chain B

Receptor sequence
>6ab6B (length=303) Species: 430911 (Penaeus vannamei nodavirus) [Search protein sequence]
ISRLGPDSDFLTSVVAKASTSIVTPADRILVKQPLSASSFPGTRITGLSS
YWERYKWLSAVARYVPAVPNTVACQFVMYIDTDPLDDPSNISDDNQIVRQ
AVSQAGSNQFNFNTSKTVPLIVRADNQYYYTGVDKQNLRFSLQGILYIIQ
VTDLINFNGELITQDLTCGSLFLDWLVNFSIPQINPTSLTDVRVDKAVNF
IKPEVSGVAEIQTVTGLSPSTSYLLTPAFLEQNFQSEAGIYILSATPVEG
EGTISINMDPTVTTVSGFIKVKTDTFGTFDLSVVLTTASKKQTTGFNIIA
ATS
3D structure
PDB6ab6 The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
ChainB
Resolution3.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B E118 N250 E53 N185
BS02 CA B E118 Q248 E53 Q183
BS03 CA B D146 D148 D151 D81 D83 D86
BS04 CA B D148 D151 D83 D86
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
GO:0046872 metal ion binding
Cellular Component
GO:0019028 viral capsid
GO:0044423 virion component

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6ab6, PDBe:6ab6, PDBj:6ab6
PDBsum6ab6
PubMed30820467
UniProtA5H7Q8

[Back to BioLiP]