Structure of PDB 6a50 Chain B

Receptor sequence

>6a50B (length=527) Species: 303 (Pseudomonas putida)

MASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACV
VGIADGYAQASRKPAFINLHSAAGTGNAMGALSNARTSHSPLIVTAGQQT
RAMIGVEAGETNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAP
QGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSA
SNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFR
GLMPAGIAAISQLLEGHDVVLVIGAPVFRYVFYDPGQYLKPGTRLISVTC
DPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDA
GRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAA
GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIF
VIMNNGTYGMLRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNL
EQLKGSLQEALSAKGPVLIEVSTVSPV

3D structure

• PDB: 6a50 A Synthetic Pathway for Acetyl-Coenzyme A Biosynthesis
• Chain: B
• Resolution: 1.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	TPP	B	N23 P24 E47 H70	N23 P24 E47 H70
BS02	MG	B	N117 L118 R120	N117 L118 R120
BS03	MG	B	D428 N455 T457	D428 N455 T457
BS04	TPP	B	T377 S378 G401 L403 G427 D428 G429 S430 Y433 N455 T457 Y458 G459 M460 L461	T377 S378 G401 L403 G427 D428 G429 S430 Y433 N455 T457 Y458 G459 M460 L461

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Dec 2 16:48:59 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6a50', asym_id = 'B', title = 'A Synthetic Pathway for Acetyl-Coenzyme A Biosynthesis'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6a50', asym_id='B', title='A Synthetic Pathway for Acetyl-Coenzyme A Biosynthesis')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0000287,0003824,0030976', uniprot = '', pdbid = '6a50', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000287,0003824,0030976', uniprot='', pdbid='6a50', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>