Structure of PDB 5zw3 Chain B

Receptor sequence
>5zw3B (length=193) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]
DRYEQINDYIEALLKPRPDNVKRLEAYAEEHHVPIMEKAGMEVLLQILSV
KQPKKILEIGTAIGYSAIRMALELPSAEIYTIERNEKRHEEAVNNIKEFQ
LDDRIHVFYGDALELADAVHVTAPYDVIFIDAAKGQYQNFFHLYEPMLSP
DGVIITDNVLFIDEYNHWLMNHPDYQTAIIPVGDGLAISKKKR
3D structure
PDB5zw3 Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine.
ChainB
Resolution2.27 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.1.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SAH B P36 I37 M38 G62 A64 Y67 S68 E85 R86 R90 D113 A114 D133 A134 A135 F142 P34 I35 M36 G60 A62 Y65 S66 E83 R84 R88 D111 A112 D131 A132 A133 F140
BS02 MG B D133 D159 N160 D131 D157 N158
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0008168 methyltransferase activity
GO:0008171 O-methyltransferase activity
GO:0016300 tRNA (uridine) methyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0008033 tRNA processing
GO:0030488 tRNA methylation
GO:0032259 methylation

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Molecular Function
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Biological Process
External links
PDB RCSB:5zw3, PDBe:5zw3, PDBj:5zw3
PDBsum5zw3
PubMed29982645
UniProtO32036|TRMR_BACSU tRNA 5-hydroxyuridine methyltransferase (Gene Name=trmR)

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