Structure of PDB 5zji Chain B

Receptor sequence
>5zjiB (length=733) Species: 381124 (Zea mays subsp. mays) [Search protein sequence]
ELRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHF
GQLAIIFLWTSGNLFHVAWQGNFESWIQDPLHVRPIAHAIWDPHFGQPAV
EAFTRGGAAGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSTLSLI
GGWLHLQPKWKPSLSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPG
SRGEYVRWNNFLDVLPYPQGLGPLLTGQWNLYAQNPDSSNHLFGTTQGAG
TAILTLLGGFHPQTQSLWLTDIAHHHLAIAFIFLIAGHMYRTNFGIGHSI
KDLLEAHTPPGGRLGRGHKGLYDTINNSIHFQLGLALASLGVITSLVAQH
MYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPE
QNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEK
QILIEPIFAQWIQSAHGKTTYGFDILLSSTNGPAFNAGRNIWLPGWLNAV
NENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKK
DFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITL
WQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFL
FGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALS
IVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
3D structure
PDB5zji Structure of the maize photosystem I supercomplex with light-harvesting complexes I and II.
ChainB
Resolution3.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.97.1.12: photosystem I.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CL0 B L620 L624 W625 L619 L623 W624
BS02 CLA B S426 L427 G430 F431 L434 T529 L532 I533 L578 F581 W582 S425 L426 G429 F430 L433 T528 L531 I532 L577 F580 W581
BS03 CLA B W648 L651 H654 L655 W657 A658 W647 L650 H653 L654 W656 A657
BS04 CLA B V442 F446 V441 F445
BS05 CLA B S420 S423 W424 L427 S419 S422 W423 L426
BS06 CLA B L678 H682 I691 L677 H681 I690
BS07 SF4 B C559 C568 C558 C567
BS08 CLA B V438 D441 W582 N585 W589 L616 V437 D440 W581 N584 W588 L615
BS09 CLA B Y437 W589 F592 L616 L624 F650 H654 W657 Y717 T720 Y721 F724 Y436 W588 F591 L615 L623 F649 H653 W656 Y716 T719 Y720 F723
BS10 CLA B A658 T659 F661 M662 I665 S666 Y670 W671 A657 T658 F660 M661 I664 S665 Y669 W670
BS11 CLA B A28 H29 I56 A27 H28 I55
BS12 CLA B H29 I46 S49 H50 Q53 R174 I330 L334 A337 H28 I45 S48 H49 Q52 R173 I329 L333 A336
BS13 CLA B H29 Q53 I57 W60 H28 Q52 I56 W59
BS14 CLA B L59 F66 H67 W70 Q71 A90 L58 F65 H66 W69 Q70 A89
BS15 CLA B N64 A88 H89 Y117 S118 V645 W646 N63 A87 H88 Y116 S117 V644 W645
BS16 CLA B I91 W92 D93 H95 F104 N114 V645 W648 I90 W91 D92 H94 F103 N113 V644 W647
BS17 CLA B P94 H95 P93 H94
BS18 CLA B F51 L148 G152 L155 H156 W161 W167 F50 L147 G151 L154 H155 W160 W166
BS19 CLA B W167 H177 T293 N294 W166 H176 T292 N293
BS20 CLA B F47 H50 F51 L54 W167 R174 H177 H178 L182 F46 H49 F50 L53 W166 R173 H176 H177 L181
BS21 CLA B L129 D134 F141 A189 W190 H193 V197 R208 W209 F212 L128 D133 F140 A188 W189 H192 V196 R207 W208 F211
BS22 CLA B A189 T191 H196 F212 L213 L216 P217 L222 A188 T190 H195 F211 L212 L215 P216 L221
BS23 CLA B W230 L255 L257 H275 L278 A279 F282 I492 W229 L254 L256 H274 L277 A278 F281 I491
BS24 CLA B L257 G259 L268 D272 H275 H276 A279 I280 H351 W497 L256 G258 L267 D271 H274 H275 A278 I279 H350 W496
BS25 CLA B W123 S186 W190 H276 H277 I280 L347 V348 A357 Y358 W122 S185 W189 H275 H276 I279 L346 V347 A356 Y357
BS26 CLA B L179 F183 F284 A287 M290 Y291 L178 F182 F283 A286 M289 Y290
BS27 CLA B H177 S180 L285 H289 T293 F295 H176 S179 L284 H288 T292 F294
BS28 CLA B I286 H289 M290 I297 G298 H299 I285 H288 M289 I296 G297 H298
BS29 CLA B H299 L304 A307 H308 H298 L303 A306 H307
BS30 CLA B L305 H319 V407 L304 H318 V406
BS31 CLA B A171 R174 L175 H178 Y323 I326 L336 A337 S340 A170 R173 L174 H177 Y322 I325 L335 A336 S339
BS32 CLA B S346 L347 Q350 M383 F387 L527 T530 T531 S345 L346 Q349 M382 F386 L526 T529 T530
BS33 CLA B S340 V343 L347 Q350 H351 S354 S339 V342 L346 Q349 H350 S353
BS34 CLA B W60 S118 A370 T373 H374 I378 I718 F719 A722 W59 S117 A369 T372 H373 I377 I717 F718 A721
BS35 CLA B W60 T61 W123 S186 I344 T345 V348 M352 Y358 L371 H374 H375 W59 T60 W122 S185 I343 T344 V347 M351 Y357 L370 H373 H374
BS36 CLA B A26 H29 D30 L334 L338 F381 G385 H389 I392 Y555 W573 F576 A25 H28 D29 L333 L337 F380 G384 H388 I391 Y554 W572 F575
BS37 CLA B R314 L315 R410 M411 H414 H421 R313 L314 R409 M410 H413 H420
BS38 CLA B H421 W424 H420 W423
BS39 CLA B W424 L427 F428 F431 H432 W423 L426 F427 F430 H431
BS40 CLA B G435 L436 V438 H439 M443 K451 G434 L435 V437 H438 M442 K450
BS41 CLA B W462 I463 H467 W493 W497 W461 I462 H466 W492 W496
BS42 CLA B P484 A488 W493 P483 A487 W492
BS43 CLA B Y353 A460 I463 Q464 F509 L510 H520 I523 V590 Y593 W594 Y352 A459 I462 Q463 F508 L509 H519 I522 V589 Y592 W593
BS44 CLA B F428 L429 P457 F459 A460 F517 H520 H521 F427 L428 P456 F458 A459 F516 H519 H520
BS45 CLA B L422 L527 H528 L421 L526 H527
BS46 CLA B T18 W22 H682 W693 P697 T17 W21 H681 W692 P696
BS47 CLA B L655 V656 T659 F663 A711 H712 L654 V655 T658 F662 A710 H711
BS48 CLA B H308 T309 P311 R314 L315 H307 T308 P310 R313 L314
BS49 PQN B W22 M662 F663 S666 R668 W671 A699 L700 A705 W21 M661 F662 S665 R667 W670 A698 L699 A704
BS50 CLA B F459 W462 F458 W461
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0009055 electron transfer activity
GO:0016168 chlorophyll binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009507 chloroplast
GO:0009522 photosystem I
GO:0009535 chloroplast thylakoid membrane
GO:0009536 plastid
GO:0009579 thylakoid
GO:0016020 membrane

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5zji, PDBe:5zji, PDBj:5zji
PDBsum5zji
PubMed29880686
UniProtA0A059Q6U2

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