Structure of PDB 5z06 Chain B

Receptor sequence
>5z06B (length=698) Species: 435591 (Parabacteroides distasonis ATCC 8503) [Search protein sequence]
KPYDYVFFENSLMKGDYFYSQAKYTSPSWIKNARHHLPVAGSVAFTPGNS
LELTYVSAPGGDWYSEIQYCPVRGNDFFREPSTLSMQVRLRESMNAAALP
NIAIRYADSTYTQYLNLRNYLKDTRPGVWHPVSIPLEDFGLNAVNDTNIK
KLAAVALRPGTADGNEYTIYLDDIELLPASLPSVSALNAPVLQEAKAYER
HIDIKWIPKEDIKYYRIYRSFDGITYQPVAVRRPWMNRYTDFLGEVGKKA
YYKVTAVDYALNESNDSQTVSATTYPMTDEQLLDMVQEANFRYYWEGAEP
NSGLARENIPGRNDMIATGASGFGIMAIVAGIERGFITREEGVQRFLKIT
SFLEKADKFHGAVSHFIDGTTGKTVAFFGPKDNGGDLVETSFLFQGLLTA
RQYFNQENDKEKQIRKSIDNLWKNVEWSWYKQFKDSPYLYWHWSPDQAWV
INHKLIGWNETMITYMLAIMGPKYGISPEMYYSGWASQEEYAQEYRADWG
RVEDGKMYTNGNTYYGENLKVGVSNGGPLFFIHYSYLGLDPHKFTDKYTN
YFENNQKMAKINQRYCIENQGGYVGYGEDCWGLTASDFAWNYQAQEPMPH
RDNGTMAPTGALASFPYTPDASMKALRNYYRNHGSFLWGEYGFRDAFNLT
VNWVSPLFMGLNQAPVTVMIENYRTNLLWNLFMSHPDVQKGIQKIQSI
3D structure
PDB5z06 Characterization and Structural Analysis of a Novel exo-Type Enzyme Acting on beta-1,2-Glucooligosaccharides from Parabacteroides distasonis
ChainB
Resolution2.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.214: exo beta-1,2-glucooligosaccharide sophorohydrolase (non-reducing end).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B E29 N30 T66 N69 D192 E9 N10 T46 N49 D172
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
Cellular Component
GO:0042597 periplasmic space

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5z06, PDBe:5z06, PDBj:5z06
PDBsum5z06
PubMed29763309
UniProtA6LGF6|SOPH_PARD8 Exo beta-1,2-glucooligosaccharide sophorohydrolase (non-reducing end) (Gene Name=BDI_3064)

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