Structure of PDB 5yu3 Chain B

Receptor sequence
>5yu3B (length=344) Species: 38300 (Streptomyces pristinaespiralis) [Search protein sequence]
METWVLGRRDVAEVVAAVGRDELMRRIIDRLTGGLAEIGRGERHLSPLRG
GLERSEPVPGIWEWMPHREPGDHITLKTVGYSPANPARFGLPTILGTVAR
YDDTTGALTALMDGVLLTALRTGAASAVASRLLARPDSHTLGLIGTGAQA
VTQLHALSLVLPLQRALVWDTDPAHRESFARRAAFTGVSVEIAEPARIAA
EADVISTATSVAVGQGPVLPDTGVREHLHINAVGADLVGKTELPLGLLER
AFVTADHPEQALREGECQQLSADRLGPQLAHLCADPAAAAGRQDTLSVFD
STGFAFEDALAMEVFLEAAAERDLGIRVGIEHHPGDALDPYALQ
3D structure
PDB5yu3 Structural Basis for Recognition of L-lysine, L-ornithine, and L-2,4-diamino Butyric Acid by Lysine Cyclodeaminase.
ChainB
Resolution1.79 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.3.1.12: ornithine cyclodeaminase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD B Y81 T93 I94 T122 G147 A148 Q149 D170 T171 A208 T209 S210 V233 G234 A235 S301 T302 G303 Y81 T93 I94 T122 G147 A148 Q149 D170 T171 A208 T209 S210 V233 G234 A235 S301 T302 G303
BS02 PRO B E63 M65 K77 R121 E63 M65 K77 R121
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008473 ornithine cyclodeaminase activity
GO:0016829 lyase activity
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5yu3, PDBe:5yu3, PDBj:5yu3
PDBsum5yu3
PubMed29629557
UniProtD9UBW0

[Back to BioLiP]