Structure of PDB 5yox Chain B

Receptor sequence
>5yoxB (length=174) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
WKPEDNIPREILAILSKPHPNYQLAFLNIIQLLKTQRSISDHMYRMGLTT
MLITDKNVDRNKCIRIALVHDFAESLVKEEKHRREFETVKYLCESIIRPC
SESASREILDDWLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYFLAIN
DIKTDEVKKWTQSLLEDRQAFFDS
3D structure
PDB5yox HD domain-containing protein YGK1(YGL101W)
ChainB
Resolution2.61 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.3.89: 5'-deoxynucleotidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B H61 H89 D90 D159 H42 H70 D71 D130
Gene Ontology
Molecular Function
GO:0002953 5'-deoxynucleotidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0050484 GMP 5'-nucleotidase activity
Biological Process
GO:0009159 deoxyribonucleoside monophosphate catabolic process
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:5yox, PDBe:5yox, PDBj:5yox
PDBsum5yox
PubMed
UniProtP53144|YGK1_YEAST 5'-deoxynucleotidase YGK1 (Gene Name=YGK1)

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