Structure of PDB 5y9e Chain B

Receptor sequence
>5y9eB (length=414) Species: 10598 (human papillomavirus 58) [Search protein sequence]
KVVSTDEYVSRTSIYYYAGSSRLLAVGNPYFSIKSPNNNKKVLVPKVSGL
QYRVFRVRLPDPNKFGFPDTSFYNPDTQRLVWACVGLEIGRGQPLGVGVS
GHPYLNKFDDTETSNRYPAQPGSDNRECLSMDYKQTQLCLIGCKPPTGEH
WGKGVATDCPPLELFNSIIEDGDMVDTGFGCMDFGTLQANKSDVPIDICN
STCKYPDYLKMASEPYGDSLFFFLRREQMFVRHFFNRAGKLGEAVPDDLY
IKGSGNTAVIQSSAFFPTPSGSIVTSESQLFNKPYWLQRAQGHNNGICWG
NQLFVTVVDTTRSTNMTLCTEVTKEGTYKNDNFKEYVRHVEEYDLQFVFQ
LCKITLTAEIMTYIHTMDSNILEDWQFEDPLNKYTFWEVNLKEKFSADLD
QFPLGRKFLLQSGL
3D structure
PDB5y9e Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus.
ChainB
Resolution2.042 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG B D143 N144 R145 D124 N125 R126
BS02 MG B D244 N320 W325 M393 D218 N294 W299 M367
BS03 MG B R72 E367 R53 E341
BS04 MG B H169 D209 H150 D183
BS05 MG B T301 S304 Q305 T275 S278 Q279
BS06 MG B D335 T336 R338 S339 E367 D309 T310 R312 S313 E341
BS07 MG B P113 R338 T340 P94 R312 T314
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0019062 virion attachment to host cell
GO:0046718 symbiont entry into host cell
GO:0075509 endocytosis involved in viral entry into host cell
Cellular Component
GO:0019028 viral capsid
GO:0039620 T=7 icosahedral viral capsid
GO:0042025 host cell nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5y9e, PDBe:5y9e, PDBj:5y9e
PDBsum5y9e
PubMed28951471
UniProtP26535|VL1_HPV58 Major capsid protein L1 (Gene Name=L1)

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