Structure of PDB 5y37 Chain B

Receptor sequence
>5y37B (length=339) Species: 211110 (Streptococcus agalactiae NEM316) [Search protein sequence]
SVDMVVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPNMLAHLLKY
DTTQGRFDGTVEVKEGGFEVNGQFVKVSAEREPANIDWATDGVEIVLEAT
GFFASKEKAEQHIHENGAKKVVITAPGGNDVKTVVFNTNHDILDGTETVI
SGASCTTNCLAPMAKALQDNFGVKQGLMTTIHAYTGDQMILDGPHRGGDL
RRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELV
ATLEKDVTVEEVNAAMKAAANDSYGYTEDPIVSSDIVGISYGSLFDATQT
KVQTVDGNQLVKVVSWYDNEMSYTSQLVRTLEYFAKIAK
3D structure
PDB5y37 High-resolution crystal structure of Streptococcus agalactiae glyceraldehyde-3-phosphate dehydrogenase.
ChainB
Resolution1.36 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.2.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD B G13 G15 R16 I17 D38 L39 A100 T101 G102 F103 F104 T125 C156 N320 Y324 G12 G14 R15 I16 D37 L38 A99 T100 G101 F102 F103 T124 C155 N319 Y323
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GO:0016491 oxidoreductase activity
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661 NADP binding
GO:0051287 NAD binding
Biological Process
GO:0006006 glucose metabolic process
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:5y37, PDBe:5y37, PDBj:5y37
PDBsum5y37
PubMed29633972
UniProtQ8E3E8

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