Structure of PDB 5xxo Chain B

Receptor sequence
>5xxoB (length=732) Species: 226186 (Bacteroides thetaiotaomicron VPI-5482) [Search protein sequence]
DMDRFIDALMKKMTVEEKIGQLNLPVDIAAKIKRGEVGGLFNLKGVEKIR
DVQKQAVEQSRLGIPLLFGMDVIHGYETMFPIPLGLSCTWDMTAIEESAR
IAAIEASADGISWTFSPMVDISRDPRWGRVSEGSGEDPFLGAMIAEAMVL
GYQGKDMQRNDEIMACVKHFALYGAGEGGRDYNTVDMSRQRMFNEYMLPY
EAAVEAGVGSVMASFNEVDGVPATANKWLMTDVLRGQWGFNGFVVTNYTG
ISEMIDHGIGDLQTVSARAINAGVDMDMVSEGFVSTLKKSIQEGKVSMET
LNTACRRILEAKYKLGLFDNPYKYCDLKRPARDIFTKAHRDAARRIAAES
FVLLKNDNVTLRPGTPAEPLLPFNPKGNIAVIGPLADSRTNMPGTWSVAA
VLDRCPSLVEGLKEMTAGKANILYAKGSNLISDASYEERATMFGRSLNRD
NRTDEQLLNEALTVANQSDIIIAALGESSEMSGESSSRTDLNIPDVQQNL
LKELLKTGKPVVLVLFTGRPLTLTWEQEHVPAILNVWFGGSEAAYAIGDA
LFGYVNPGGKLTMSFPKNVGQIPLYYAHKNTGRPLAQGKWFEKFRSNYLD
VDNEPLYPFGYGLSYTTFSYGDIDLSRSTIDMTGELTAAVMVTNTGTWPG
SEVVQLYIRDLVGSTTRPVKELKGFQKIFLEPGQSEIVRFKIAPEMLRYY
NYDLQLVAEPGEFEVMIGTNSRDVKSARFTLK
3D structure
PDB5xxo Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase.
ChainB
Resolution2.02 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.21: beta-glucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC B N81 D110 W435 V437 N42 D71 W396 V398
BS02 BGC B Y287 E523 Y248 E484
BS03 BGC B D110 F154 R168 K207 M251 N286 M317 E523 D71 F115 R129 K168 M212 N247 M278 E484
BS04 MG B D699 V701 D660 V662
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008422 beta-glucosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0009251 glucan catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5xxo, PDBe:5xxo, PDBj:5xxo
PDBsum5xxo
PubMed29131329
UniProtQ8A1U1

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