Structure of PDB 5xxn Chain B

Receptor sequence
>5xxnB (length=731) Species: 226186 (Bacteroides thetaiotaomicron VPI-5482) [Search protein sequence]
DMDRFIDALMKKMTVEEKIGQLNLPVIAAKIKRGEVGGLFNLKGVEKIRD
VQKQAVEQSRLGIPLLFGMDVIHGYETMFPIPLGLSCTWDMTAIEESARI
AAIEASADGISWTFSPMVDISRDPRWGRVSEGSGEDPFLGAMIAEAMVLG
YQGKDMQRNDEIMACVKHFALYGAGEGGRDYNTVDMSRQRMFNEYMLPYE
AAVEAGVGSVMASFNEVDGVPATANKWLMTDVLRGQWGFNGFVVTNYTGI
SEMIDHGIGDLQTVSARAINAGVDMDMVSEGFVSTLKKSIQEGKVSMETL
NTACRRILEAKYKLGLFDNPYKYCDLKRPARDIFTKAHRDAARRIAAESF
VLLKNDNVTLRPGTPAEPLLPFNPKGNIAVIGPLADSRTNMPGTWSVAAV
LDRCPSLVEGLKEMTAGKANILYAKGSNLISDASYEERATMFGRSLNRDN
RTDEQLLNEALTVANQSDIIIAALGESSEMSGESSSRTDLNIPDVQQNLL
KELLKTGKPVVLVLFTGRPLTLTWEQEHVPAILNVWFGGSEAAYAIGDAL
FGYVNPGGKLTMSFPKNVGQIPLYYAHKNTGRPLAQGKWFEKFRSNYLDV
DNEPLYPFGYGLSYTTFSYGDIDLSRSTIDMTGELTAAVMVTNTGTWPGS
EVVQLYIRDLVGSTTRPVKELKGFQKIFLEPGQSEIVRFKIAPEMLRYYN
YDLQLVAEPGEFEVMIGTNSRDVKSARFTLK
3D structure
PDB5xxn Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase.
ChainB
Resolution2.05 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.21: beta-glucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC B R622 F633 R582 F593
BS02 BGC B Y287 E523 Y247 E483
BS03 BGC B D110 R168 K207 N286 M317 E523 D70 R128 K167 N246 M277 E483
BS04 MG B D699 V701 D659 V661
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008422 beta-glucosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0009251 glucan catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5xxn, PDBe:5xxn, PDBj:5xxn
PDBsum5xxn
PubMed29131329
UniProtQ8A1U1

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